Different gradient length

vdemichev / DiaNN

DIA-NN - a universal automated software suite for DIA proteomics data analysis.

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Different gradient length #1086

Open Giu-F opened 4 months ago

Giu-F commented 4 months ago

Hi, is it correct to search runs with different numbers of points per peak (so different scan window) together, if NOT using MBR? For example, runs with different gradient lenght. Or would be more correct to set multiple searches? Thanks!

vdemichev commented 4 months ago

Hi Giulia,

Perfectly fine for identification (also fine with MBR), but not for quantification.

Best, Vadim