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vdemichev / DiaNN

DIA-NN - a universal automated software suite for DIA proteomics data analysis.
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Different gradient length #1086

Open Giu-F opened 1 month ago

Giu-F commented 1 month ago

Hi, is it correct to search runs with different numbers of points per peak (so different scan window) together, if NOT using MBR? For example, runs with different gradient lenght. Or would be more correct to set multiple searches? Thanks!

vdemichev commented 1 month ago

Hi Giulia,

Perfectly fine for identification (also fine with MBR), but not for quantification.

Best, Vadim