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vdemichev / DiaNN

DIA-NN - a universal automated software suite for DIA proteomics data analysis.
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SQLite exception on Linux #1190

Open GolAGitHub opened 1 month ago

GolAGitHub commented 1 month ago

Hi,

I am running DIA-NN (1.8.2_beta_8 and 1.9.1) on Linux and have been experiencing the following error (slurm output): terminate called after throwing an instance of 'CppSQLite3Exception'

This seems to happen when searching a large number of files (>60). Is there a way to address this?

Thank you.

vdemichev commented 1 month ago

Hi,

How does the log look like? This error would mean that the Bruker .d folder is not readable/accessible or contains corrupted data or is not dia-PASEF.

Best, Vadim

GolAGitHub commented 1 month ago

This issue seems to be intermittent. After restarting the job a few times, the search eventually finished. In retrospect, this may have nothing to do with DIA-NN. My apologies!