search

vdemichev / DiaNN

DIA-NN - a universal automated software suite for DIA proteomics data analysis.
Other
283 stars 53 forks source link

match between run diabled #1229

Closed Li5459000 closed 3 weeks ago

Li5459000 commented 3 weeks ago

Hi,

Thank you for developing such amazing software.

I have raw data files A,B,C, and when I analyze them separately using DIA-NN, the results differ from when I analyze them together with match between runs disabled.

I understand that, in most cases, enabling match between runs is recommended.

vdemichev commented 3 weeks ago

Hi,

This will be like this if any of mass accuracies and the scan window are left at 0. Is this the case?

Best, Vadim