diann_maxlfq {diann} for multiplex-DIA

vdemichev / DiaNN

DIA-NN - a universal automated software suite for DIA proteomics data analysis.

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diann_maxlfq {diann} for multiplex-DIA #738

Open Li5459000 opened 1 year ago

Li5459000 commented 1 year ago

Hi Vadim,

I'm attempting to use R to process the main report generated by DIANN in multiplex mode, but I'm a beginner in R.

The code in the diann-rpackage seems to be designed for LF-DIA only? What modifications do I need to make to the diann-rpackage code to make it compatible with multiplex-DIA's main report?

vdemichev commented 1 year ago

Yes, the package is for label-free. For multiplexing, need to write custom scripts to quantify proteins. Unfortunately, no way around that at the moment.