vector-engineering / covidcg

A COVID-19 CoV Genetics (CG) browser to inform therapeutics development
https://covidcg.org
MIT License
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download mutation list data matrix covid-cg2.5.2 #569

Open carlottaolivero opened 2 years ago

carlottaolivero commented 2 years ago

Hello,

Is it possible to download the mutation list data matrix of the covid cg 2.5.2 for sars-cov-2? I can't find the data matrix in the folder covidcg-2.5.2 (https://github.com/vector-engineering/covidcg/releases/tag/v2.5.2) I look for a .json or .xlsx version of it.

Many thanks for the help, Carlotta

atc3 commented 2 years ago

Hi,

Which mutation list data matrix are you referring to? Can you provide a picture if it's something displayed on the site?

We do not share any data in the repository itself, only on our hosted database.

Albert

carlottaolivero commented 2 years ago

Hi Albert, I usually download the json from this download tab (left-hand side of the screenshot) from the online webpage https://covidcg.org/?tab=report

image The problem is that the website version is the 2.5.1 beta1 and is not the most recent.

image

I hope I have explained myself.

Many thanks!!! Carlotta

atc3 commented 2 years ago

Hi Carlotta,

Apologies for the confusion in the versions. We are currently working to push out a newer version (2.7.0) with some additional features, but are still doing final testing and bug fixing on our end before publishing to the public site. I will respond to this thread as soon as it is live (should be ready ~2 weeks from now).

The current version of the site still has JSON downloads for the mutation table available. Are you having any issues with the current site's download?

Albert

carlottaolivero commented 2 years ago

Thank you very much Albert, I will wait for the new online version (2.7.0) no, currently we don't have any issue downloading the online version.

Many thanks, Carlotta

atc3 commented 1 year ago

Hi Carlotta,

Sorry for the delay in publishing the newer version. v2.7 is now available at covidcg.org and has the mutation data matrix download available