Installation of BactMAP fails (MacOS): xcrun error - Githubissues

veeninglab / BactMAP

gateway for segmentation data to Rstats & visualization with ggplot2 - in development

http://veeninglab.com/bactmap

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Installation of BactMAP fails (MacOS): xcrun error #6

Closed vrrenske closed 4 years ago

vrrenske commented 5 years ago

Problem:

During installation of BactMAP on a Mac, you get the following error:

xcrun error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at:/Library/CommandLineTools/usr/bin/xcrun

After this, the compilation of packages fails (the first in the row is usually rlang).

Solution:

Close R and Rstudio
Open the Terminal on your Mac (press command-spacebar and type "terminal" to find the program).
Run the following line in the Terminal

 xcode-select --install

Open R and Rstudio again, and try installing BactMAP again (remotes::install_github("veeninglab/bactmap")