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veg / flea-pipeline

A pipeline for long-read sequencing data.
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max length parameter interferes with copy number computation #60

Open kemaleren opened 8 years ago

kemaleren commented 8 years ago

A permissive ccs_to_hqcs_identity combined with a strict max_query_target_length_ratio causes all the long CCSs to load onto a long HQCS, over inflating its copy number.