MRCA looks wrong in UMASS short dataset

veg / flea-pipeline

A pipeline for long-read sequencing data.

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MRCA looks wrong in UMASS short dataset #8

Closed kemaleren closed 9 years ago

kemaleren commented 9 years ago

The majority of sequences in the earliest timepoint have a 7 bp insertion after HXB2 coordinate 132. For some reason this insertion does not appear in the MRCA.

kemaleren commented 9 years ago

This happens because the MRCA consensus mechanism does not take copynumber into account.

kemaleren commented 9 years ago

Closed in 6f60a2b40202545d264d422a78db786a691d7ef7.