It seems as though some of the tests have not been updated to reflect the most recent file directory structure.
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ERROR: Failure: ImportError (No module named 'flea.correct_frames')
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Traceback (most recent call last):
File "/home/sweaver/programming/flea/env/lib/python3.4/site-packages/nose/failure.py", line 39, in runTest
raise self.exc_val.with_traceback(self.tb)
File "/home/sweaver/programming/flea/env/lib/python3.4/site-packages/nose/loader.py", line 418, in loadTestsFromName
addr.filename, addr.module)
File "/home/sweaver/programming/flea/env/lib/python3.4/site-packages/nose/importer.py", line 47, in importFromPath
return self.importFromDir(dir_path, fqname)
File "/home/sweaver/programming/flea/env/lib/python3.4/site-packages/nose/importer.py", line 94, in importFromDir
mod = load_module(part_fqname, fh, filename, desc)
File "/home/sweaver/programming/flea/env/lib/python3.4/imp.py", line 235, in load_module
return load_source(name, filename, file)
File "/home/sweaver/programming/flea/env/lib/python3.4/imp.py", line 171, in load_source
module = methods.load()
File "<frozen importlib._bootstrap>", line 1220, in load
File "<frozen importlib._bootstrap>", line 1200, in _load_unlocked
File "<frozen importlib._bootstrap>", line 1129, in _exec
File "<frozen importlib._bootstrap>", line 1471, in exec_module
File "<frozen importlib._bootstrap>", line 321, in _call_with_frames_removed
File "/home/sweaver/programming/flea/flea-pipeline/tests/test_frame_correction.py", line 3, in <module>
from flea.correct_frames import correct_frame
ImportError: No module named 'flea.correct_frames'
Name Stmts Miss Cover Missing
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flea_pipeline/DNAcons.py NoSource: No source for code: '/home/sweaver/programming/flea/flea-pipeline/flea_pipeline/DNAcons.py'.
flea_pipeline/__init__.py NoSource: No source for code: '/home/sweaver/programming/flea/flea-pipeline/flea_pipeline/__init__.py'.
flea_pipeline/alignment_pipeline.py NoSource: No source for code: '/home/sweaver/programming/flea/flea-pipeline/flea_pipeline/alignment_pipeline.py'.
flea_pipeline/analysis_pipeline.py NoSource: No source for code: '/home/sweaver/programming/flea/flea-pipeline/flea_pipeline/analysis_pipeline.py'.
flea_pipeline/backtranslate.py NoSource: No source for code: '/home/sweaver/programming/flea/flea-pipeline/flea_pipeline/backtranslate.py'.
flea_pipeline/correct_shifts.py NoSource: No source for code: '/home/sweaver/programming/flea/flea-pipeline/flea_pipeline/correct_shifts.py'.
It seems as though some of the tests have not been updated to reflect the most recent file directory structure.