Closed mhturra closed 4 years ago
Dear @mhturra,
You are missing libraries on your system. You'll need libssl-dev, libcrypto, and libcurl-dev if you're using a Debian based system.
Best, Steven
Dear @stevenweaver , I failed to install HIV-TRACE using pip3 in Ubuntu, I got similar errors in this issue.
Building wheel for bioext (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py bdist_wheel did not run successfully.
│ exit code: 1
╰─> [527 lines of output]
Failed building wheel for bioext
...
Failed building wheel for hyphy-python
I also try pip3 install bioext==0.19.1
and pip3 install bioext==0.19.7
, but they didn't work.
Addintionally, I have installed libcurl4-openssl-dev, libssl-dev, and openssl of the newest version.
And the content of pip3 freeze
is
attrs==21.2.0
Automat==20.2.0
Babel==2.8.0
bcrypt==3.2.0
biopython==1.79
blinker==1.4
certifi==2020.6.20
chardet==4.0.0
click==8.0.3
cloud-init==22.2
colorama==0.4.4
command-not-found==0.3
configobj==5.0.6
constantly==15.1.0
cryptography==3.4.8
Cython==0.29.30
dbus-python==1.2.18
distro==1.7.0
distro-info===1.1build1
fakemp==0.9.1
hppy==0.9.9
httplib2==0.20.2
hyperlink==21.0.0
hyphy-python==0.1.10
idna==3.3
importlib-metadata==4.6.4
incremental==21.3.0
jeepney==0.7.1
Jinja2==3.0.3
joblib==1.1.0
jsonpatch==1.32
jsonpointer==2.0
jsonschema==3.2.0
keyring==23.5.0
launchpadlib==1.10.16
lazr.restfulclient==0.14.4
lazr.uri==1.0.6
MarkupSafe==2.0.1
more-itertools==8.10.0
netifaces==0.11.0
numpy==1.22.4
oauthlib==3.2.0
pexpect==4.8.0
ptyprocess==0.7.0
pyasn1==0.4.8
pyasn1-modules==0.2.1
PyGObject==3.42.0
PyHamcrest==2.0.2
PyJWT==2.3.0
pyOpenSSL==21.0.0
pyparsing==2.4.7
pyrsistent==0.18.1
pysam==0.19.1
pyserial==3.5
python-apt==2.3.0+ubuntu2
python-debian===0.1.43ubuntu1
pytz==2022.1
PyYAML==5.4.1
requests==2.25.1
scipy==1.8.1
SecretStorage==3.3.1
service-identity==18.1.0
six==1.16.0
sos==4.3
ssh-import-id==5.11
systemd-python==234
tornado==6.1
Twisted==22.1.0
ubuntu-advantage-tools==27.8
ufw==0.36.1
unattended-upgrades==0.1
urllib3==1.26.5
wadllib==1.3.6
zipp==1.0.0
zope.interface==5.4.0
Best, Huanchang
Hi,
I am unable to install hivtrace using pip3, I get the following error.
`/usr/bin/ld: cannot find -lssl /usr/bin/ld: cannot find -lcrypto /usr/bin/ld: cannot find -lcurl collect2: error: ld returned 1 exit status error: command 'x86_64-linux-gnu-g++' failed with exit status 1
Failed building wheel for hyphy-python Running setup.py clean for hyphy-python Failed to build hyphy-python Installing collected packages: hyphy-python, hppy, hivclustering, hivtrace Running setup.py install for hyphy-python ... /^canceled`
pip3 freeze
Thanks
Mark