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veg / hivtrace

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Unable to intall HIVTRACE #79

Closed Huanchang-Yan closed 3 years ago

Huanchang-Yan commented 3 years ago

Hello! I have follow the instruction for HIVTRACE and have installed System Dependencies sucessfully. However, when I tried to install HIVTRACE and the error log says:

/usr/bin/ld: cannot find -lssl
/usr/bin/ld: cannot find -lcrypto
/usr/bin/ld: cannot find -lcurl
collect2: error: ld returned 1 exit status
error: command 'x86_64-linux-gnu-g++' failed with exit status 1

Command "/usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-6dscu327/hyphy-python/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-3cczxch_-record/install-record.txt --single-version-externally-managed --compile --user --prefix=" failed with error code 1 in /tmp/pip-build-6dscu327/hyphy-python/

And my content of pip3 freeze is: asn1crypto==0.24.0 attrs==17.4.0 Automat==0.6.0 bioext==0.20.1 biopython==1.79 blinker==1.4 certifi==2018.1.18 chardet==3.0.4 click==6.7 cloud-init==20.2 colorama==0.3.7 command-not-found==0.3 configobj==5.0.6 constantly==15.1.0 cryptography==2.1.4 Cython==0.29.24 distro-info===0.18ubuntu0.18.04.1 fakemp==0.9.1 httplib2==0.9.2 hyperlink==17.3.1 idna==2.6 incremental==16.10.1 Jinja2==2.10 joblib==1.0.1 jsonpatch==1.16 jsonpointer==1.10 jsonschema==2.6.0 keyring==10.6.0 keyrings.alt==3.0 language-selector==0.1 MarkupSafe==1.0 netifaces==0.10.4 numpy==1.19.5 oauthlib==2.0.6 PAM==0.4.2 pyasn1==0.4.2 pyasn1-modules==0.2.1 pycrypto==2.6.1 pygobject==3.26.1 PyJWT==1.5.3 pyOpenSSL==17.5.0 pysam==0.16.0.1 pyserial==3.4 python-apt==1.6.5+ubuntu0.3 python-debian==0.1.32 pyxdg==0.25 PyYAML==3.12 requests==2.18.4 requests-unixsocket==0.1.5 scipy==1.5.4 SecretStorage==2.3.1 service-identity==16.0.0 six==1.16.0 ssh-import-id==5.7 systemd-python==234 Twisted==17.9.0 ufw==0.36 unattended-upgrades==0.1 urllib3==1.22 zope.interface==4.3.2

stevenweaver commented 3 years ago

Dear @Huanchang-Yan,

You need to install libcurl in order to successfully install hivtrace. libcurl4-openssl-dev on Ubuntu.

Best, Steven

Huanchang-Yan commented 3 years ago

Dear @stevenweaver ,

Thanks for your help. I have installed libcurl4-openssl-dev, libssl-dev, and openssl and it worked well.

Best wishes, Huanchang