Open NicMAlexandre opened 1 year ago
spond
commented
1 year ago Dear @nicolasalexandre21,
The sequence above installs the HyPhy program and standard libraries. pre-msa is a part of standalone analyses (hyphy-analyses) that need to be installed separately. I just realized that the README there did not include this step.
I've updated it now: see https://github.com/veg/hyphy-analyses/blob/master/README.md
Best, Sergei
NicMAlexandre
commented
1 year ago Ah this is perfect! Thank you!
On Tue, Dec 6, 2022 at 3:54 PM Sergei Pond @.***> wrote:
Dear @nicolasalexandre21 https://github.com/nicolasalexandre21,
The sequence above installs the HyPhy program and standard libraries. pre-msa is a part of standalone analyses (hyphy-analyses) that need to be installed separately. I just realized that the README there did not include this step. I've updated it now: see https://github.com/veg/hyphy-analyses/blob/master/README.md
Best, Sergei
— Reply to this email directly, view it on GitHub https://github.com/veg/hyphy-analyses/issues/26#issuecomment-1340172207, or unsubscribe https://github.com/notifications/unsubscribe-auth/AFB6333WN7L7RQQOEGKWNM3WL7G3TANCNFSM6AAAAAASWC4ZUE . You are receiving this because you were mentioned.Message ID: @.***>
-- Best,
Nicolas Alexandre PhD Candidate, Integrative Biology Whiteman Lab University of California - Berkeley @. @.>
Hi I installed hyphy-analyses per the instructions like so:
module load gcc openmpi git clone https://github.com/veg/hyphy.git hyphy-develop cd hyphy-develop git checkout develop cmake -DZLIB_LIBRARY="/global/scratch/users/nalexandre/miniconda3/lib/libz.a" -DZLIB_INCLUDE_DIR="/global/scratch/users/nalexandre/miniconda3/lib/" ./ make -j MP ./HYPHYMP analysis-file --help
I am trying to figure out how to run pre-msa.bf, but I cannot find it in the directory following installation nor can I run the executable when I download it manually.