Path Issue: hyphy version: /HYPHY 2.5.0(MP) for Linux on x86_64\

[jzehr]

When running hyphy outside of the hyphy directory, I observe this error:

(grapes) 15:06:40 jordanz@silverback ~ /hyphy/hyphy
Error:
Duplicate analysis keyword (not case sensitive) in {CLST, Apply clustering methods for phylogeny reconstruction (UPGMA,WPGMA,complete or minimal linkage) to nucleotide, protein and codon data, using MLE of pairwise distances with user-selectable models. These methods produce trees with global molecular clock., ClusterAnalysis.bf}

Check errors.log for execution error details.

[stevenweaver]

Dear @jzehr,

Thank you for bringing this issue to our attention. The issue arises because HyPhy attempts to load its library files from the current working directory.

Please try

./hyphy/hyphy LIBPATH=`pwd`hyphy

to work around the issue.

Best, Steven

[github-actions[bot]]

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