veg / hyphy

HyPhy: Hypothesis testing using Phylogenies
http://www.hyphy.org
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BIG PROBLEM ADMIN! #1473

Closed noor3468 closed 2 years ago

noor3468 commented 2 years ago

Hello admin! Hope you are well, Im trying to run MEME and IFEL through Classic mode since 3 weeks but unfortunately its not working. And in normal mode when I select SLAC its also not working. Can u elaborate what is the problem and when it will be okay? THANKS

spond commented 2 years ago

Dear @noor3468,

We no longer actively maintain classic.datamonkey.org; we simply don't have the resources (@stevenweaver : can you elaborate).

You can run MEME and IFEL on the new Datamonkey; the analysis will run much faster and produce more accurate results. To emulate IFEL, you simply select internal branches for testing in FEL.

image

Best, Sergei

noor3468 commented 2 years ago

Thank you for your response, but how can I reach to new Data monkey?

On Thu, Apr 28, 2022, 1:23 AM Sergei Pond @.***> wrote:

Dear @noor3468 https://github.com/noor3468,

We no longer actively maintain classic.datamonkey.org; we simply don't have the resources @.*** https://github.com/stevenweaver : can you elaborate).

You can run MEME and IFEL on the new Datamonkey; the analysis will run much faster and produce more accurate results. To emulate IFEL, you simply select internal branches for testing in FEL.

[image: image] https://user-images.githubusercontent.com/1018513/165624578-25ce6528-aef7-4330-b138-af4c4546332a.png

Best, Sergei

— Reply to this email directly, view it on GitHub https://github.com/veg/hyphy/issues/1473#issuecomment-1111445982, or unsubscribe https://github.com/notifications/unsubscribe-auth/AY5PW7D7U3JQM4VNDKIEOO3VHGO5TANCNFSM5UQGM5XQ . You are receiving this because you were mentioned.Message ID: @.***>

spond commented 2 years ago

Dear @noor3468,

www.datamonkey.org

Which address have you been using?

Best, Sergei

noor3468 commented 2 years ago

I'm using that one but you mentioned in your first reply to use new Data monkey, therefore I asked

On Thu, Apr 28, 2022, 1:33 AM Sergei Pond @.***> wrote:

Dear @noor3468 https://github.com/noor3468,

www.datamonkey.org

Which address have you been using?

Best, Sergei

— Reply to this email directly, view it on GitHub https://github.com/veg/hyphy/issues/1473#issuecomment-1111454205, or unsubscribe https://github.com/notifications/unsubscribe-auth/AY5PW7BMMJ4UIUXCWEYMEGDVHGQCLANCNFSM5UQGM5XQ . You are receiving this because you were mentioned.Message ID: @.***>

spond commented 2 years ago

Dear @noor3468,

Sorry, I am not sure what site you are referring to. Have you been using

http://www.datamonkey.org

or

http://classic.datamonkey.org

Best, Sergei

noor3468 commented 2 years ago

I'm using the first one www.datamonkey.org But if I open it then click on classic and want to do MEME by it but unfortunately failed.

On Thu, Apr 28, 2022, 6:42 AM Sergei Pond @.***> wrote:

Dear @noor3468 https://github.com/noor3468,

Sorry, I am not sure what site you are referring to. Have you been using

http://www.datamonkey.org

or

http://classic.datamonkey.org

Best, Sergei

— Reply to this email directly, view it on GitHub https://github.com/veg/hyphy/issues/1473#issuecomment-1111647852, or unsubscribe https://github.com/notifications/unsubscribe-auth/AY5PW7BDRIXPFPGJFMSAVS3VHHUHZANCNFSM5UQGM5XQ . You are receiving this because you were mentioned.Message ID: @.***>

stephenshank commented 2 years ago

Dear @noor3468,

To run MEME on the latest Datamonkey you can try here: http://www.datamonkey.org/meme, accessed by the Methods and Tools dropdown.

Best, Stephen

noor3468 commented 2 years ago

Thanks, I'll check it out.

On Thu, Apr 28, 2022, 6:26 PM Stephen Shank @.***> wrote:

Dear @noor3468 https://github.com/noor3468,

To run MEME on the latest Datamonkey you can try here: http://www.datamonkey.org/meme, accessed by the Methods and Tools dropdown.

Best, Stephen

— Reply to this email directly, view it on GitHub https://github.com/veg/hyphy/issues/1473#issuecomment-1112202331, or unsubscribe https://github.com/notifications/unsubscribe-auth/AY5PW7CJG3GCOQZYNM2IJN3VHKGYNANCNFSM5UQGM5XQ . You are receiving this because you were mentioned.Message ID: @.***>