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veg / hyphy

HyPhy: Hypothesis testing using Phylogenies
http://www.hyphy.org
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Tests fail in outsource build #1528

Closed yurivict closed 1 year ago

yurivict commented 1 year ago 
-- Build files have been written to: /disk-samsung/freebsd-ports/biology/hyphy/work/.build
ninja: no work to do.
[  0% 1/1] cd /disk-samsung/freebsd-ports/biology/hyphy/work/.build && /usr/local/bin/ctest --force-new-ctest-process
Test project /disk-samsung/freebsd-ports/biology/hyphy/work/.build
      Start  1: UNIT-TESTS
 1/20 Test  #1: UNIT-TESTS .......................***Failed    0.00 sec
/usr/local/bin/bash: run_unit_tests.sh: No such file or directory

      Start  2: CODON
 2/20 Test  #2: CODON ............................***Failed    0.03 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/SimpleOptimizations/SmallCodon.bf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/SimpleOptimizations/

Check errors.log for execution error details.

      Start  3: PROTEIN
 3/20 Test  #3: PROTEIN ..........................***Failed    0.01 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/SimpleOptimizations/IntermediateProtein.bf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/SimpleOptimizations/

Check errors.log for execution error details.

      Start  4: MTCODON
 4/20 Test  #4: MTCODON ..........................***Failed    0.02 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/mtDNA-code.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start  5: ALGAE
 5/20 Test  #5: ALGAE ............................***Failed    0.05 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/algae-mtDNA.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start  6: CILIATES
 6/20 Test  #6: CILIATES .........................***Failed    0.01 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/ciliate-code.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start  7: SLAC
 7/20 Test  #7: SLAC .............................***Failed    0.03 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/SLAC.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start  8: SLAC-PARTITIONED
 8/20 Test  #8: SLAC-PARTITIONED .................***Failed    0.01 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/SLAC-partitioned.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start  9: FEL
 9/20 Test  #9: FEL ..............................***Failed    0.04 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/FEL.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start 10: MEME
10/20 Test #10: MEME .............................***Failed    0.01 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/MEME.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start 11: MEME-PARTITIONED
11/20 Test #11: MEME-PARTITIONED .................***Failed    0.05 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/MEME-partitioned.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start 12: BUSTED
12/20 Test #12: BUSTED ...........................***Failed    0.01 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/BUSTED.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start 13: BUSTED-SRV
13/20 Test #13: BUSTED-SRV .......................***Failed    0.03 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/BUSTED-SRV.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start 14: RELAX
14/20 Test #14: RELAX ............................***Failed    0.01 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/RELAX.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start 15: FUBAR
15/20 Test #15: FUBAR ............................***Failed    0.03 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/FUBAR.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start 16: BGM
16/20 Test #16: BGM ..............................***Failed    0.02 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/BGM.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start 17: CONTRAST-FEL
17/20 Test #17: CONTRAST-FEL .....................***Failed    0.01 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/CFEL.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start 18: GARD
18/20 Test #18: GARD .............................***Failed    0.01 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/GARD.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start 19: FADE
19/20 Test #19: FADE .............................***Failed    0.01 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/FADE.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

      Start 20: ABSREL
20/20 Test #20: ABSREL ...........................***Failed    0.01 sec
Error:
Could not read batch file '/disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/ABSREL.wbf'.
Path stack:
    /usr/local/share/hyphy/
    /disk-samsung/freebsd-ports/biology/hyphy/work/.build/tests/hbltests/libv3/

Check errors.log for execution error details.

0% tests passed, 20 tests failed out of 20

Total Test time (real) =   0.43 sec

The following tests FAILED:
      1 - UNIT-TESTS (Failed)
      2 - CODON (Failed)
      3 - PROTEIN (Failed)
      4 - MTCODON (Failed)
      5 - ALGAE (Failed)
      6 - CILIATES (Failed)
      7 - SLAC (Failed)
      8 - SLAC-PARTITIONED (Failed)
      9 - FEL (Failed)
     10 - MEME (Failed)
     11 - MEME-PARTITIONED (Failed)
     12 - BUSTED (Failed)
     13 - BUSTED-SRV (Failed)
     14 - RELAX (Failed)
     15 - FUBAR (Failed)
     16 - BGM (Failed)
     17 - CONTRAST-FEL (Failed)
     18 - GARD (Failed)
     19 - FADE (Failed)
     20 - ABSREL (Failed)
Errors while running CTest
FAILED: CMakeFiles/test.util 
cd /disk-samsung/freebsd-ports/biology/hyphy/work/.build && /usr/local/bin/ctest --force-new-ctest-process
ninja: build stopped: subcommand failed.
*** Error code 1

clang-14 FreeBSD 13 STABLE

github-actions[bot] commented 1 year ago

Stale issue message

yurivict commented 1 year ago

not stale