Can not run GARD results

[VeterinaryLi]

Error:

Could not read batch file '/home/lg/miniconda3/lib/hyphy/TemplateBatchFiles/GARDProcessor.bf'.

Path stack:

/home/lg/miniconda3/lib/hyphy/

/home/lg/miniconda3/lib/hyphy/TemplateBatchFiles/

I found the software which lack the file of GARDProcessor.bf

[spond]

Dear @VeterinaryLi,

GARDProcessor.bf has been deprecated for some time. The gard analysis generates JSON files which can be viewed directly in vision.hyphy.org/GARD or processed otherwise.

Can you clarify what are you trying to do?

Best, Sergei

[VeterinaryLi]

Dear Sergei; I want to know the KH value of the reconbination sites. Could you tell me how to do? Best Gen Li

---- Replied Message ---- | From | Sergei @.> | | Date | 11/04/2022 03:42 | | To | @.> | | Cc | @.**@.> | | Subject | Re: [veg/hyphy] Can not run GARD results (Issue #1539) |

Dear @VeterinaryLi,

GARDProcessor.bf has been deprecated for some time. The gard analysis generates JSON files which can be viewed directly in vision.hyphy.org/GARD or processed otherwise.

Can you clarify what are you trying to do?

Best, Sergei

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.Message ID: @.***>

[spond]

Dear @VeterinaryLi,

This functionality is currently missing; I will see if I can port the old processor into a standalone analysis. Will keep the issue open for now. In the meantime, you can run KH/SH tests on different partitions using raxml or IQTree.

Best, Sergei

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