Hello, I have been running a loop using the command line to run a BUSTED analysis and everything runs fine up until the "### Performing the full (dN/dS > 1 allowed) branch-site model fit" step for each gene.
2 : io.SpoolLFToPath(busted.full_model[terms.likelihood_function],io.PromptUserForFilePath("Save BUSTED model fit to this file ['/dev/null' to skip]"));
Hello, I have been running a loop using the command line to run a BUSTED analysis and everything runs fine up until the "### Performing the full (dN/dS > 1 allowed) branch-site model fit" step for each gene.
I get the following error:
"Function call stack 1 : [namespace = QL_hLHoK] fprintf(path, CLEAR_FILE, __lf_spool);
2 : io.SpoolLFToPath(busted.full_model[terms.likelihood_function],io.PromptUserForFilePath("Save BUSTED model fit to this file ['/dev/null' to skip]"));
"
Here is an example of a job submission:
(echo 1; echo 5; echo 1; echo test.T2P2T.fasta; echo test.B.nwk; echo 5; echo 1; echo 3; echo 3; echo 3; echo 250; echo 1; echo test.B.json; echo test.B.params; echo 1) | hyphy -i