veg / hyphy

HyPhy: Hypothesis testing using Phylogenies
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MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode 1. #1682

Closed SHAOHUAMUZI closed 3 months ago

SHAOHUAMUZI commented 5 months ago

Hello, Hyphy team: I use the Hyphy software package for GARD analysis, I encounter an error when running Aligned sequences .However, the same Aligned sequences for GARD analysis on DataMoney is successful, but the .NEX file provided by DataMoney triggers the same error whether for MEME or aBSRELD analysis The error message can be found at http://datamonkey.org/absrel/65a9cbe85d766b144f68ed10. and the Hyphy software package reports an error during GARD analysis: ![Uploading 262dff2b-1b38-43fe-9fa8-eb604be86be1.png…]()

spond commented 5 months ago

Dear @SHAOHUAMUZI,

If you click on the "Download Log" button (sorry, not the most obvious place to look), you will see that the nature of the error is that aBSREL only works (by design) with a single partition dataset.

Best, Sergei

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SHAOHUAMUZI commented 5 months ago

Dear proDear Professor: Thank you for your response. However, I am still unable to perform MEME analysis on the tree files generated for the three breakpoints by Datamonkey. Does MEME only support analysis on a single tree file as well?

SHAOHUAMUZI commented 5 months ago

The MEME error message can be found at http://datamonkey.org/meme/65ab4b085d766b144f694694.But I can successfully run and analyze this .nex file (from datamonkey GARD)using the HyPhy software package locally.

spond commented 5 months ago

Dear @SHAOHUAMUZI,

Sorry to hear that Datamonkey is giving you trouble. This issue seems to stem from the same cause as https://github.com/veg/hyphy/issues/1675

The issue is fixed in the latest HyPhy release, but Datamonkey may be using an older HyPhy version.

@stevenweaver : were you able to deploy a newer HyPhy version to Datamonkey?

Best, Sergei

stevenweaver commented 5 months ago

Dear @spond,

2.5.58 is currently on Datamonkey. I can update to 2.5.59 shortly.

Best, Steven

github-actions[bot] commented 3 months ago

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