search

veg / hyphy

HyPhy: Hypothesis testing using Phylogenies
http://www.hyphy.org
Other
200 stars 68 forks source link

amino acid sequences #1694

Closed ElvisFFVII closed 2 months ago

ElvisFFVII commented 4 months ago

How can I send my amino acid sequences for analysis?

Every time I submit to the server this error appears: This doesn't seem to be a nucelotide alignment. It had 20 character states, whereas we expected 4. Perhaps you uploaded an amino-acid alignment by mistake?

My sequences are aligned and in fasta format

spond commented 4 months ago

Dear @ElvisFFVII,

Most Datamonkey analyses require coding sequences (FADE is an exception), so they won't accept amino-acid data. You may need to find CDS/codon sequences underlying your amino-acid alignment.

Best, Sergei

github-actions[bot] commented 2 months ago

Stale issue message