MayvJing
commented
7 months ago Similar error also happened when I use MEME and FEL, while aBSREL is still ok. I run the same data 5 days ago and there were no error that time.
/var/spool/torque/mom_priv/jobs/3560087.new-silverback.SC: line 29: meme --alignment /home/datamonkey/datamonkey-js-server/production/app/meme/output/65e41cba52b2134956ccbfeb --tree /home/datamonkey/datamonkey-js-server/production/app/meme/output/65e41cba52b2134956ccbfeb.tre --code Universal >> /home/datamonkey/datamonkey-js-server/production/app/meme/output/65e41cba52b2134956ccbfeb.meme.progress: No such file or directory
spond
I have prepped my nucleotide data by aligning sequences and removing stop codons. Busted will generate a tree but then outputs this error:
/var/spool/torque/mom_priv/jobs/3556890.new-silverback.SC: line 41: /home/datamonkey/datamonkey-js-server/production/app/busted/../../.hyphy/res//TemplateBatchFiles/SelectionAnalyses/BUSTED.bf --code Universal --alignment /home/datamonkey/datamonkey-js-server/production/app/busted/output/65e387fb52b2134956cca316 --tree /home/datamonkey/datamonkey-js-server/production/app/busted/output/65e387fb52b2134956cca316.tre --branches All --rates 3 --syn-rates 3 --multiple-hits None --srv Yes --grid-size 250 --starting-points 1 --kill-zero-lengths No --output /home/datamonkey/datamonkey-js-server/production/app/busted/output/65e387fb52b2134956cca316.BUSTED.json --save-fit /dev/null: No such file or directory
is this an issue with my dataset (attached) or the server?
Thanks, sarah hyphy1.txt