Closed emollier closed 1 month ago
Dear @emollier,
Great catch. I usually don't check these very old files during CI tests, but maybe I should! I have indeed made some tweaks to the optimization code (something to do with gradient re-normalization) in 2.5.61 and that's what triggered the error. I am going to revert this change, and push a few more changes for 2.5.62. I'll go ahead and release it tomorrow (or possibly today).
Thanks for your helpful and timely bug report.
Best, Sergei
Hi Serguei,
I pulled hyphy 2.5.62 and verified the issue is resolved. Thank you!
Have a nice day, :) Étienne.
Hi,
While trying to integrate hyphy 2.5.61 into Debian sid, I ran into the following error while checking the program was in working conditions and able to run examples:
Said error.log shows:
The crash does not appear with hyphy 2.5.60, and MolecularClockF81.bf example file does not appear to have changed. Am I trying to execute hyphy against a particularly pathological file, in which case I may safely ignore the error with MolecularClockF81.bf? Or is it possible the test uncovered an issue in changes affecting the matrix processing code?
Have a nice day, :) Étienne.
PS: for the avoidance of doubt, the tested file is Examples/SimpleConstraints/MolecularClockF81.bf from hyphy source code.