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HyPhy: Hypothesis testing using Phylogenies
http://www.hyphy.org
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Persistent error when running Gard #1713

Open MiloEliot opened 1 month ago

MiloEliot commented 1 month ago

Hello! Thank you for providing such amazing tools!

Recently, I have encountered a persistent problem while running Gard on DataMonkey. My jobs are always aborted after approximately one day without generating any log files to specify the reason. The latest job I submitted is 3954531.new-silverback. While the job is still queued for running, the result page displays an error.

I would greatly appreciate any assistance in resolving this issue.

spond commented 1 month ago

Dear @MiloEliot,

Could you please provide the URL for the datamonkey job that failed (rather than the ticket)?

Best, Sergei

MiloEliot commented 1 month ago

Hello! Thank you for your reply. Here is the link to the job: http://datamonkey.org/gard/66523af79c7e3231770f9374

stevenweaver commented 1 month ago

Dear @MiloEliot,

The error listed in our system indicates that this job exceeded the job limit of 72 hours.

PBS: job killed: walltime 259207 exceeded limit 259200

In situations like this, it's recommended that you run the job locally or reduce the dataset.

Best, Steven

MiloEliot commented 1 month ago

Hello! Thanks a lot for the troubleshooting and the suggestion. I will try to run it locally.