veg / hyphy

HyPhy: Hypothesis testing using Phylogenies
http://www.hyphy.org
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Analysis ends but does not progress to report generation #1717

Closed hkunerth closed 1 month ago

hkunerth commented 3 months ago

I'm having an issue running SLAC on the datamonkey server. Typically an analysis takes 10-15 minutes for my dataset, then advances to the report screen where I can view results and download the statistics table.

A recent dataset seems to hang up after 20 minutes and does not advance to this screen. The job will seem to still be running but if I open up the job queue it will have disappeared. I also do not get any results emailed to me.

The ticket number is 3961521.new-silverback for the latest run, but this has happened 2-3 times

spond commented 3 months ago

Dear @hkunerth,

Would you please let us know what the URL for the job is? It's a bit tricky matching ticket numbers with the job logs.

Best, Sergei

hkunerth commented 3 months ago

For sure,

It's

https://www.datamonkey.org/slac/6661f0ba9c7e3231771274ab

Like I said, it still says that it's running but is no longer in the job queue and is taking 10x the time of similar sized jobs I recently submitted, so I suspect it's actually frozen up.

stevenweaver commented 3 months ago

Dear all,

This is an actual bug due to excessive results JSON size.

The results can be found https://data.hyphy.org/web/datamonkey/6661f0ba9c7e3231771274ab.SLAC.json and can be visualized with http://vision.hyphy.org/slac.

Best, Steven

hkunerth commented 3 months ago

Thanks much!!

github-actions[bot] commented 1 month ago

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