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veg / hyphy

HyPhy: Hypothesis testing using Phylogenies
http://www.hyphy.org
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Issues with GARD on current release #995

Closed ghost closed 4 years ago

ghost commented 5 years ago

Hi,

I have been trying unsuccessfully to use GARD on v2.5.0 and have been getting errors.

When I run '--type Nucleotide' the analysis finishes. The JSON file gets printed out but the 'best-gard' results file is empty so I can't see the results.

When I run '--type Codon' I get the following error during the multi breakpoint analysis: User-defined function 'gard.GA.initializeModels' needs 4 parameters, but 3 were supplied.

This happens when using either MPI or the new multi-threaded version.

Any insight on how to fix this problem?

github-actions[bot] commented 4 years ago

Stale issue message

stevenweaver commented 4 years ago

This issue should be resolved in the latest version of HyPhy, 2.5.5