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vegandevs / vegan

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis
https://vegandevs.github.io/vegan/
GNU General Public License v2.0
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Functions `ordirgl` and `ordiplot3d` no longer seem to be in the package #620

Closed aghaynes closed 6 months ago

aghaynes commented 7 months ago

The intro-vegan vignette mentions the ordirgl and ordiplot3d functions, but they no longer seem to be a part of vegan...? Does the vignette need updating?

https://github.com/vegandevs/vegan/blob/65dce8d72b51adc20b337ef0566f9bf7ae3b111e/vignettes/intro-vegan.Rnw#L159C1-L164C1

gavinsimpson commented 7 months ago

They are in package vegan3d; if we don't mention this in the vignette then yes, the vignette needs updating.

jarioksa commented 7 months ago

Yes indeed, the functions are mentioned in vignettes/intro-vegan.Rnw. The vignette should be updated, and it makes sense to hint to ggplot2 graphics as well (although ggvegan is not yet in CRAN).

aghaynes commented 7 months ago

yes, a hint about ggvegan would be great... i reverse engineered a couple of things for a project i'm working on now, including elliptical hulls, which dont seem to be in ggvegan at the moment