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vektorious / mbac

Tools for deep analysis of bacteria motility
MIT License
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Plotting the migration area and speed #7

Open vektorious opened 6 years ago

vektorious commented 6 years ago

We need a script which generates a plot of the migration area and migration speed for each picture. The plots can later be combined with the pictures to create a time lapse video with correlating plots. This basically means you will have as many plots as images!

I would suggest for example a simple line graph for the migration area and a bar plot for migration speed but other graph types might be suitable. I would also suggest using python to do the plotting to keep the code in one language.

We can use this test data to test the script. Each datapoint should represent the migration area in pixel (5 min steps).

If someone needs inspiration: take a look at this awesome python graph gallery.

CalmDownKarm commented 6 years ago

Can I take up this issue? Should have a PR by Monday.

vektorious commented 6 years ago

Sure! Thanks for joining the project!

JudeNiroshan commented 6 years ago

Hi @vektorious , I'll be starting to plot the WUT and WT datasets. I'll come up with my own script for that. I'll be using the above mentioned python library for my task.