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velocyto-team / velocyto.R

RNA velocity estimation in R
http://velocyto.org
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Can we used velocyto to analyze bulk RNA seq data #118

Open pangxueyu233 opened 4 years ago

pangxueyu233 commented 4 years ago

Hello,

Can we used velocyto to analysis bulk RNA seq data. We want used this wonderful methods to do the same analysis juts like the smart-seq2 pipeline you have showed us, because we just want to identify the unsplice genes counts and splice genes counts in each bulh sample.

Thanks

pangxueyu233 commented 4 years ago

whether it would be okay for the pre-porcessing of bam files, we just deduplicate the bulk RNA-seq bam.