Dear all,
I ran samtools sort first as the document suggested, but still always got the killed error no matter how large the memory I set.
The bam file is approximately 10GB. The command line like this:
velocyto run -b $barcode -o $sample -e $sample -m ~/Cellranger-GRCh38-6.1.2/hg38_rmsk.gtf $sample/${sample}.assigned_sorted_tagged.bam $gtf
What should I do?
Dear all, I ran samtools sort first as the document suggested, but still always got the killed error no matter how large the memory I set. The bam file is approximately 10GB. The command line like this: velocyto run -b $barcode -o $sample -e $sample -m ~/Cellranger-GRCh38-6.1.2/hg38_rmsk.gtf $sample/${sample}.assigned_sorted_tagged.bam $gtf What should I do?