CellRanger --include-introns

velocyto-team / velocyto.py

RNA velocity estimation in Python

http://velocyto.org/velocyto.py/

BSD 2-Clause "Simplified" License

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CellRanger --include-introns #356

Open GEmilioHO opened 1 year ago

GEmilioHO commented 1 year ago

Hi Velocyto Team,

I have a quick pre-processing question. CellRanger is now recommending including introns for UMI counting; and so, the latest CellRanger version (v7) is now doing it by default.

Does this affect the Velocyto analysis or is this taken into consideration?

Thank you!