how velocyto fits to cellrange-arc output

velocyto-team / velocyto.py

RNA velocity estimation in Python

http://velocyto.org/velocyto.py/

BSD 2-Clause "Simplified" License

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how velocyto fits to cellrange-arc output #362

Open zqmiao-mzq opened 1 year ago

zqmiao-mzq commented 1 year ago

hi,

how velocyto fits to cellrange-arc output, velocyto is designed for cellrange cout output with the bam file named "possorted_genome_bam.bam", but cellrange-arc output with the bam file named "gex_possorted_bam.bam".

how to deal with the problem?

thanks

mana-W commented 1 year ago

I also met this problem and tried to change the file name for gex_possorted_bam.bam, but that didn't work.

lpuche commented 10 months ago

Hi! I would try using the advanced mode (run without 10x). Best, Lorenzo