How to get fastq header information of spliced and unspliced 10X short reads

velocyto-team / velocyto.py

RNA velocity estimation in Python

http://velocyto.org/velocyto.py/

BSD 2-Clause "Simplified" License

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How to get fastq header information of spliced and unspliced 10X short reads #396

Open wenhu0701 opened 4 months ago

wenhu0701 commented 4 months ago

Hi Gioele,

Thanks for making this wonderful package! I used velocyto to get the spliced and unspliced UMI count matrix of 10X samples. Now I'm trying to retrieve the spliced and unspliced short reads alignment results out of the gex_possorted_bam.bam. I wonder if there's a way to get the fastq header of spliced/unspliced reads from velocyto output?

Thanks! Wen