Open DRLaks opened 6 years ago
From the way you refer to it, it seems that you are referring to the R implementation of velocyto. This Issues page is for python implementation.
Anyways, if instead, you were interested in the python implementation the answer follows.
You need to use the filter_cells
methods and then proceed normally with the analysis.
If clusters are derived somehow after feature selection or other analysis steps I recommend saving the cluster labels and restarting a new analysis from scratch and call filter_cells
as one of the first lines.
Thanks for the quick response. I didn't realize this was for python and indeed I'd like input for R if possible.
Is there a way to make the gene.relative.velocity.estimates and resultant map only for a subset of the data based on clusters?