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venelin / PCMFit

An R-package for maximum likelihood inference of Gaussian phylogenetic models with shifts
https://venelin.github.io/PCMFit
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Data length warning message #4

Closed mark-grabowski closed 4 years ago

mark-grabowski commented 4 years ago

I'm was trying to use PCMFitMixed if for 2 different analyses and one thing that kept happening is I got this Warning message after it completes a run:

2: In matrix(P$mean[i[iP]], nrow = n, ncol = length(iP), ... : data length exceeds size of matrix 3: In matrix(P$mean[i[iP]], nrow = n, ncol = length(iP), ... : data length exceeds size of matrix

Though my data set was originally a matrix, It seems like I solved this issue (no more warning messages) by converting my data set to a matrix using the following step, which removes all the row and column names:

X<-matrix(as.numeric(X),nrow=dim(X)[1],ncol=dim(X)[2])
venelin commented 4 years ago

Hello, that looks strange, but I cannot locate the code generating this Warning.