What steps will reproduce the problem?
1. Click AltAnalyze icon to start and choose "Begin Analysis"
2. Select database version - EnsMart65; Select vendor/data type - RNASeq;
Select Species - Homo Sapiens; Select platform - RNA-seq aligned read counts
3. Analysis options - Process AltAnalyze filtered
4. Select directory
5. Analyze Exon or Junction Data - default parameters except for" Analyze
ontologies and pathways with GO-Elite" - Run Immediately
What do you see instead?
Exporting pathway images for 3 Wikipathways (expect 0-1 minute runtime)
...restricting to pdf
Error encountered with Multiple Processor Mode or server timeout... trying
single processor mode
exported to the folder "WikiPathways"
3 Wikipathways failed to be exported (e.g., WP35 )
Traceback (most recent call last):
File "GO_Elite.pyc", line 1949, in visualizePathways
File "WikiPathways_webservice.pyc", line 249, in visualizePathwayAssociations
File "WikiPathways_webservice.pyc", line 64, in getPathwayAs
NameError: global name 'client' is not defined
Wikipathways output in 1 seconds
What version of the product are you using? On what operating system?
AltAnalyze_v.2.0.8.1-Win64
Please provide any additional information below.
Seems like an issue with WikiPathways webservice access parameters.
Attached is the log file from the AltAnalyze Run.
Thanks,
Tom
Original issue reported on code.google.com by thomas.w...@gmail.com on 18 Feb 2014 at 9:43
Original issue reported on code.google.com by
thomas.w...@gmail.comon 18 Feb 2014 at 9:43Attachments: