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venkatmi / altanalyze

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Gene expression filtering not working in command-line mode #6

Open GoogleCodeExporter opened 8 years ago

GoogleCodeExporter commented 8 years ago 
What steps will reproduce the problem?
1. Do or do not specific --GEcutoff

What is the expected output? What do you see instead?
You will obtain many more alternative exon predictions than performing the same 
query in the GUI. This occurs because the program was not converting the listed 
gene expression fold cutoff from a string to a float. As a result, python 
doesn't remove any genes from the analysis based on differential constitutive 
levels.

Please use labels and text to provide additional information.
This is fixed in AltAnalyze 2.0.

Original issue reported on code.google.com by nsalomo...@gmail.com on 5 Feb 2011 at 9:12