Number of interactions between 2 different cell types

[zara03]

Hi I am trying to understand the package. I am trying to extract total number of interactions between different cell types. Like what i did was:

C <- netVisual_chord_gene(cellchat, sources.use = c("Cholangiocytes"), targets.use = c("Cholangiocytes","Mesencyme,"Neutrophils"),legend.pos.x = 10,legend.pos.

y = 10)

and i got chord diagram but i want to know quantitative number of interactions?How to extract that? When i am opening "C" which is object that has these interaction it comes like the image i attached.i am unable to see total or number of interactions? Kindly guide.

[prete]

Hi @zara03 I think you're using CellChat and this is the CellPhoneDB repository. May be better to open an issue on that tool's repo https://github.com/sqjin/CellChat/issues

For what it's worth, the returned object for netVisual_chord_gene is a recordedplot object, so I doubt it has the info you're looking for. Possibly you'll get a better undersatinding but looking at that function's source code https://rdrr.io/github/sqjin/CellChat/src/R/visualization.R

[zara03]

Thank you so much. I am trying to understand meanwhile i have posted on tools repo.