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ventolab / CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
https://www.cellphonedb.org/
MIT License
305 stars 52 forks source link

latest scikit-learn #108

Closed wangjiawen2013 closed 1 year ago

wangjiawen2013 commented 1 year ago

Hi, cellphonedb uses scikit-learn==0.24, while the latest scikit-learn is version 1.2.2, hope cellphonedb can support the latest scikit-learn to improve it's compatibility, because most packages in our environment use the latest one now.

ktroule commented 1 year ago

Thanks for the suggestion.

We recommend installing CellPhoneDB in a different environment.

thisisamirv commented 1 year ago

Come on guys please update CellPhoneDB codes to support the latest scikit-learn. I don't want to use conda

thisisamirv commented 1 year ago

You are not even using the scikit-learn package anywhere in the code

datasome commented 1 year ago

Hi wangjiawen2013 and thisisamirv,

We've just updated the master branch to scikit-learn version 1.2.2 - you can get it via pip install "git+https://github.com/ventolab/CellphoneDB.git"

Best regards,

Robert.

thisisamirv commented 1 year ago

Thanks great