search

ventolab / CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
https://www.cellphonedb.org/
MIT License
305 stars 52 forks source link

Download error #139

Closed Ithinky closed 10 months ago

Ithinky commented 10 months ago

Hi, thanks for your great tool !

I created a conda environment with python=3.10.12, and excuted pip install cellphonedv==4, but the scikit-learn can't be downloaded, just like the following:

note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for scikit-learn Failed to build scikit-learn ERROR: Could not build wheels for scikit-learn, which is required to install pyproject.toml-based projects

I have tried to download scikit-learn alone use pip, but the lateste version 1.3.0 can be downloaded while the version 0.24 can't.

Could you give me some advice, thanks!

ktroule commented 10 months ago

Hi.

To install the latest version of the tool please refer to what's described on the main page of the repository.

  1. Install it in a new conda environment.
  2. Use pip install cellphonedb

Try this should work. Moreover, can you provide the operative system in which you are trying this?

Kind regards

Ithinky commented 10 months ago

Hi, ktroule I use centos, and your advice worked! Thank you very much! Best, Ithinky