Open dhairya02 opened 3 months ago
Hi @dhairya02,
To be able to debug the issue, could you send the input files you are using to contact@cellphonedb.org? If the files are too big to share via email, you can also send us the link to access them.
Best, Batu
Hi @dhairya02,
Sorry we couldn't help you since we haven't received your inputs. However, as mentioned in #186 with the same reported error, it's possible that your analysis ends up with finding no CellPhoneDB interactions, and this could be related that you might be using genes from a different organism, not human. If this is the case, you should convert the genes to their corresponding human orthologues. You can check details in our documentation: https://cellphonedb.readthedocs.io/en/latest/RESULTS-DOCUMENTATION.html#counts-file
Hope this helps!
Best, Batu
Hi I am running cpdb_statistical_analysis_method of cellphone db. My anndata shape is (6890, 2000) with following parameters:
Can you please help as to what it means?