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ventolab / CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
https://www.cellphonedb.org/
MIT License
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[ERROR] Invalid Counts data: Counts values are not decimal values. Incorrect file format #182

Open guqing94 opened 2 months ago

guqing94 commented 2 months ago

Hi，I got an error when running cellphonedb on ubuntu. I hope you can help me.

An error occurred when I ran this command：_### cellphonedb method statistical_analysis --counts-data hgnc_symbol meta_nl.csv counts_nl.txt_ The error is ### [ERROR] Invalid Counts data: Counts values are not decimal values. Incorrect file format.

my counts_nl.txt is like ： 9

and my meta_nl.csv is like，if is needed： image

This is a screenshot of the running interface： image

I did not use ensemble id but I specified the hgnc_symbol in the command line. The data in txt is standardized.

I am running in a python 3.7 environment, because there will be an error when installing cellponedb for versions 3.8 and above.

English is not my native language; please excuse my typing errors. Thank you so much.

cakirb commented 2 months ago

Hi @guqing94,

To be able to debug the issue, could you send the input files you are using to contact@cellphonedb.org? If the files are too big to share via email, you can also send us the link to access them.

Best, Batu