Closed flyingmonster1 closed 7 months ago
Ooops, I also ran into problems while plotting. It returns the following errors as I executed
cellphonedb plot dot_plot
Error: package or namespace load failed for 'methods':
loadNamespace()里算'methods'时.onLoad失败了,详细内容:
调用: assign(".methodsNamespace", where, baseenv())
错误: cannot add binding of '.methodsNamespace' to the base environment
Error: loadNamespace()里算'methods'时.onLoad失败了,详细内容:
调用: assign(".methodsNamespace", where, baseenv())
错误: cannot add binding of '.methodsNamespace' to the base environment
In addition: Warning message:
package "methods" in options("defaultPackages") was not found
Error: package or namespace load failed for 'datasets':
loadNamespace()里算'methods'时.onLoad失败了,详细内容:
调用: assign(".methodsNamespace", where, baseenv())
错误: cannot add binding of '.methodsNamespace' to the base environment
Error: package or namespace load failed for 'utils':
loadNamespace()里算'methods'时.onLoad失败了,详细内容:
调用: assign(".methodsNamespace", where, baseenv())
错误: cannot add binding of '.methodsNamespace' to the base environment
Error: package or namespace load failed for 'grDevices':
loadNamespace()里算'methods'时.onLoad失败了,详细内容:
调用: assign(".methodsNamespace", where, baseenv())
错误: cannot add binding of '.methodsNamespace' to the base environment
Error: package or namespace load failed for 'graphics':
loadNamespace()里算'methods'时.onLoad失败了,详细内容:
调用: assign(".methodsNamespace", where, baseenv())
错误: cannot add binding of '.methodsNamespace' to the base environment
Error: package or namespace load failed for 'stats':
loadNamespace()里算'methods'时.onLoad失败了,详细内容:
调用: assign(".methodsNamespace", where, baseenv())
错误: cannot add binding of '.methodsNamespace' to the base environment
Error: package or namespace load failed for 'methods':
loadNamespace()里算'methods'时.onLoad失败了,详细内容:
调用: assign(".methodsNamespace", where, baseenv())
错误: cannot add binding of '.methodsNamespace' to the base environment
During startup - Warning messages:
1: package 'datasets' in options("defaultPackages") was not found
2: package 'utils' in options("defaultPackages") was not found
3: package 'grDevices' in options("defaultPackages") was not found
4: package 'graphics' in options("defaultPackages") was not found
5: package 'stats' in options("defaultPackages") was not found
6: package 'methods' in options("defaultPackages") was not found
Error: loadNamespace()里算'methods'时.onLoad失败了,详细内容:
调用: assign(".methodsNamespace", where, baseenv())
错误: cannot add binding of '.methodsNamespace' to the base environment
Hi,
This is likely do to some incompatibilities with dependencies with R packages. Alternatively, you can try these plotting packages
Hope this helps, Luz
Hi developer, The cellphonedb build in conda virtual environment, but when plot dot_plot, it trigger below error, I ran
cellphonedb plot heatmap_plot
andcellphonedb plot dotplot
but both functions gave out the same error message:Would you kindly give any hint on what's going wrong? Thx!