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ventolab / CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
https://www.cellphonedb.org/
MIT License
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Logger parameters lost in this line #90

Closed Ericsii closed 1 year ago

Ericsii commented 1 year ago

https://github.com/ventolab/CellphoneDB/blob/e3d1b4c6407e0e19388565eb97675aa576dcb0ab/cellphonedb/src/database/manager/DatabaseVersionManager.py#L76

I think this line should be

 app_logger.warning(f"Database '{value}' is not available. Trying to download it.")
datasome commented 1 year ago

Please note that for the current version of CellphoneDB package (the master branch of https://github.com/ventolab/cellphonedb and in https://pypi.org/project/CellPhoneDB/) you need to use data in https://github.com/ventolab/cellphonedb-data/releases/tag/v4.0.0 or earlier.

https://github.com/ventolab/cellphonedb-data/releases/tag/v4.1.0 is a release candidate for the new version of CellphoneDB package (v4.0.0) that we will be releasing in week or so. The database file format in the new package version (v4.0.0) is not compatible with that in the current package version (3.1.0).

Thank you for your patience with us and apologies for any confusion.