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ventolab / CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.
https://www.cellphonedb.org/
MIT License
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Some Gene Names Are Missing From Results #99

Closed connerlambden closed 7 months ago

connerlambden commented 1 year ago

Hi, when looking at pvalues.txt, some genes are missing:

id_cp_interaction interacting_pair partner_a partner_b gene_a gene_b
CPI-CS0A5B6BD7A 12oxoLeukotrieneB4_byPTGR1_LTB4R complex:12oxoLeukotrieneB4_byPTGR1 simple:Q15722   LTB4R

Any ideas on this?

luzgaral commented 1 year ago

Hi @connerlambden

Gene names for complex complex:12oxoLeukotrieneB4_byPTGR1 are missing because it is a complex, not a single protein/gene. The name of the complex is 12oxoLeukotrieneB4_byPTGR1.

Hope this helps.

Best

Luz