Unexplained Cell Type Annotations

[guarelin]

Hi!

Thank you for this awesome dataset resource! There are a few cell type annotations I can't find in the paper, and after poking around the code, I'm still having a hard time defining them.

Namely:

• hormones cell types for the endometrial cells/nuclei
• eM cell types for the immune cells/nuclei

I could be missing something, but I would appreciate it if you can point me in the right direction. Thank you!

[guarelin]

Note - answered my own question via the supplement.

Supplement PDF

Hormones cell types - clusters of epithelial or mesenchymal cells from donors on exogenous hormones.

I still can't find info on the eM cell types though. There are 16 nucleus cell types in the figure at the bottom of this notebook: Immune Nuclei MILO

But there are 18 nucleus cell types in this figure: Extended Fig 8

In notebook but not figure:

• eM1, eM2
• these are also found in the h5ad data relase

In figure but not notebook:

• uNK1_cycling
• plasma B cell
• uM1, uM2, uM2_cycling

To me it seems like eM1 and eM2 were renamed in the paper to uM1 and uM2