verilylifesciences / deepmass

DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.
Apache License 2.0
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error #6

Closed naomikk7 closed 2 years ago

naomikk7 commented 3 years ago

Hi, I tried batch mode several times but it gave me error message like this:

ERROR: (gcloud.ml-engine.jobs.submit.prediction) Projects instance [angular-stacker-325501] not found: Field: prediction_input.model_name Error: The model resource: "deepmass_prism" was not found. Please create the model resource first by using 'gcloud ai-platform models create deepmass_prism'.

Can you pls help me with it? Thank you!

snail123815 commented 2 years ago

Same here, didn't get any reply from the email address listed. Cox only told me that I should do as the git readme.

pgrosu commented 2 years ago

@naomikk7 and @snail123815 Just out of curiosity I tried to list the models available, and there are none available to perform any AI prediction. For example:

[pgrosu]$ gcloud ml-engine models list
Listed 0 items.
[pgrosu]$

Maybe they are still in the process of updating Google's AI model resources. It mentions that contacting DeepMass@google.com might help.

snail123815 commented 2 years ago

@pgrosu I have contacted them for quite some times already, no reply from that side.

The empty list I think is actually because updated google policy, they do not expose existing models to users like before I guess. But I don't know how to find and add the deep mass model.

pgrosu commented 2 years ago

@snail123815 I wouldn't be surprised if DeepMass might be a Google dead project, and we just weren't told about it, see: https://killedbygoogle.com/

petercim commented 2 years ago

Hi all,

First, apologies for the slow reply. The DeepMass project isn't a dead Google project, but we have been either away or distracted by other work.

Re: this issue -- I'm still looking into it. It seems there's been a change in project region. Could someone here try selecting global instead of us-central1 region, and see if that makes any difference?

snail123815 commented 2 years ago

Hi @petercim, Thanks for clarifying! This worked:

gcloud ai-platform predict --model deepmass_prism --project deepmass-204419 --format json --json-instances "input.json" --region global > prediction.results
petercim commented 2 years ago

Glad to hear that worked, thanks for giving it a try @snail123815 ! I just updated the README file and will now close this issue. Thanks all!