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verilylifesciences / deepmass

DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.
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Can't find Google Group #8

Closed EvelinaPillai closed 1 year ago

EvelinaPillai commented 2 years ago

Hi,

Sorry for posting here but I wanted to reach out on your Google Group, unfortunately I can't find any Google Group under "DeepMass@google.com"

Can you help me out ?

Best regards, Evelina

petercim commented 2 years ago

Hi Evelina,

Sure, how can I help?

Best, Peter

On Wed, May 25, 2022 at 3:18 AM EvelinaPillai @.***> wrote:

Hi,

Sorry for posting here but I wanted to reach out on your Google Group, unfortunately I can't find any Google Group under @.***"

Can you help me out ?

Best regards, Evelina

— Reply to this email directly, view it on GitHub https://github.com/verilylifesciences/deepmass/issues/8, or unsubscribe https://github.com/notifications/unsubscribe-auth/AA6Q7PTQXFKHPPGIREKKNV3VLX5ALANCNFSM5W4TRR6A . You are receiving this because you are subscribed to this thread.Message ID: @.***>

EvelinaPillai commented 2 years ago

Hi Peter,

We would like to apply the in-silico predicted spectral library from Prism to increase the number of protein IDs and improve protein quantification (LFQ) of a DDA experiment.

In this context, we would like to ask the following question:

Can Prism be implemented in a standard MaxQuant workflow for LFQ?
Maybe in a way that the predicted intensities from the output of Prism can be imported into MaxQuant to improve the peptide identification and therefore also LFQ of proteins?

We would be very grateful for your support. Thank you very much in advance!

Best regards, Evelina

petercim commented 2 years ago

Hi Evelina,

I suggest you reach out to Prof. Juergen Cox, who has been integrating Prism into MaxQuant.

Best, Peter

On Fri, May 27, 2022 at 12:32 AM EvelinaPillai @.***> wrote:

Hi Peter,

We would like to apply the in-silico predicted spectral library from Prism to increase the number of protein IDs and improve protein quantification (LFQ) of a DDA experiment.

In this context, we would like to ask the following question:

Can Prism be implemented in a standard MaxQuant workflow for LFQ? Maybe in a way that the predicted intensities from the output of Prism can be imported into MaxQuant to improve the peptide identification and therefore also LFQ of proteins?

We would be very grateful for your support. Thank you very much in advance!

Best regards, Evelina

— Reply to this email directly, view it on GitHub https://github.com/verilylifesciences/deepmass/issues/8#issuecomment-1139359136, or unsubscribe https://github.com/notifications/unsubscribe-auth/AA6Q7PQVQZ2LH35W4U6MAHLVMB3BBANCNFSM5W4TRR6A . You are receiving this because you commented.Message ID: @.***>