vertesy TheCorvinas issues

vertesy / TheCorvinas

Various Scripts and Summaries

http://vertesy.github.io/TheCorvinas

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#35 vertesy opened 3 years ago
0
multiQC for 10X single-cell reads using the VBC RNA-seq pipeline

#34 vertesy opened 5 years ago
0
inline_list_char() is not working

#33 vertesy opened 7 years ago
0
Barcode N-mismatch generation by Koos

#32 vertesy closed 3 years ago
2
Is name-line sufficiently checked in Concatenator.CELseq.py?

#31 vertesy closed 3 years ago
0
First column is separated by a space+tab not a tab in BarcodeCounts.tsv and TranscriptCounts.tsv but not in ReadCounts.tsv

#30 vertesy closed 3 years ago
0
Report Mappability, etc .sout style

#29 vertesy closed 3 years ago
0
Removing UMI-s 1 hamming away from an oversequenced UMI-transcript-cell combination

#28 vertesy closed 3 years ago
0
Faster Cell-Barcode collapsing

#27 vertesy closed 3 years ago
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Fixing incorrect gene names in the dog transcriptome using regular expressions and in-place editing

#26 vertesy closed 3 years ago
0
val2col() does not keep names

#25 vertesy closed 3 years ago
1
inline_vec.char() should copy the variable name by default

#24 vertesy closed 3 years ago
0
Update MapAndGo for 384

#23 vertesy closed 3 years ago
0
MapAndGo should parse the download link for each cout and sout file

#22 vertesy closed 3 years ago
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MapAndGo assumes that the .fastq file has the ending _001.fastq

#21 vertesy closed 3 years ago
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MapAndGo.py should create files with .tsv extension files in extract_counts_rb.pl

#20 vertesy closed 8 years ago
0
MapAndGo.py should check if cat_files (and other folders exist) before executing

#19 vertesy closed 8 years ago
1
MapAndGo.py should write logs to a separate logs/ folder, not into the home dir

#18 vertesy closed 8 years ago
0
write.simple.tsv() does not return the lenght of a named vector

#17 vertesy closed 3 years ago
0
BUG in long vectors: inline_vec.char() should introduce after every 500 characters.

#16 vertesy closed 3 years ago
0
Add lazy = T option to read.simple...() functions: Read only if not in memory space!

#15 vertesy closed 3 years ago
0
Add read if !exists to read.simple functions

#14 vertesy closed 3 years ago
0
Give meaningful defaults in *_out folders in MapAndGo.py

#13 vertesy closed 8 years ago
0
Sloppy directory checking in MapAndGo.py in 5ac928d and before

#12 vertesy closed 8 years ago
1
CodeNRoll: add option to "read.simple.tsv()" to read only if its not in the mem space

#11 vertesy closed 3 years ago
0
Snaggy images wont display

#10 vertesy closed 8 years ago
1
read.simple.tsv() should handle first row's column-name. Maybe its done, look up

#9 vertesy closed 3 years ago
0
Error in eval(expr, envir, enclos) : could not find function "colorRampPalette" when loaded in the terminal

#8 vertesy closed 8 years ago
0
Open the functions for in text edit to find typos

#7 vertesy closed 8 years ago
0
Create the CodeAndRoll package

#6 vertesy closed 3 years ago
1
as.named.vector loses NULL elements

#5 vertesy closed 8 years ago
1
Open file feature to write.simple() functions

#4 vertesy closed 8 years ago
0
Annotate all functions with the description in the first line!

#3 vertesy closed 8 years ago
0
add abline() to wplot function

#2 vertesy closed 8 years ago
1
wplot functions with an automatic legend?

#1 vertesy closed 8 years ago
1