Biological findings from pseudoBulk: intronic content and MALAT1 - Githubissues

vertesy / pseudoBulk

Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq pipeline.

https://vertesy.github.io/pseudoBulk

MIT License

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Biological findings from pseudoBulk: intronic content and MALAT1 #4

Open vertesy opened 5 years ago

vertesy commented 5 years ago

General

[ ] Check if you see the same in our other sc datasets
- [ ] rerun with Oli all 6
[ ] Check if you see the same in bulk

MALAT1

[ ] Is the MALAT1 correlation to RC true in general?
[ ] Is the MALAT1 fraction correlation to TSS-RC true in general?

intronic content and

[ ] Where do we find high intronic content?