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gfastats
A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.
MIT License
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Error when running gfastats version 1.3.8
#52
SaimMomin12
closed
1 month ago
2
can it rename contigs in gff file
#51
gunjanpandey
closed
2 months ago
3
bioconda requires more files created during release
#50
Smeds
closed
1 month ago
3
gap length
#49
ksc289
closed
2 months ago
2
gfastats scaffold circularity
#48
k-krakowski
closed
6 months ago
4
issues about install: phmap.h (No such file or directory)
#47
maxmaronna
closed
8 months ago
3
add read mapping option to gfastats?
#46
maxmaronna
closed
9 months ago
1
error: unrecognized command line option ‘-std=gnu++14’
#45
poojancf
closed
11 months ago
1
Possible to add gaps?
#44
ValentinaPeona
closed
11 months ago
2
aws: command not found
#43
AlcaArctica
closed
1 year ago
2
Agp integration does not support terminal gaps
#42
gf777
closed
11 months ago
1
multiple output files at once
#41
Nadolina
closed
1 year ago
1
fasta-to-gfa conversion
#40
YanWangTF
closed
1 year ago
4
Null results for statistics parameters
#39
CEPHAS-01
closed
1 year ago
3
Can gfastats convert fastg to gfa?
#38
tarunaaggarwal
opened
1 year ago
1
Could we use it to calculate pan-genome?
#37
ld9866
closed
1 year ago
2
Semaphore
#36
gf777
closed
1 year ago
0
fetch upstream
#35
gf777
closed
1 year ago
0
GFAstats hangs with unrecognized action
#34
mahesh-panchal
closed
1 year ago
2
command not found: gfstats
#33
coliverbrown
closed
1 year ago
1
Feature Request : Circular Indicator
#32
erinyoung
closed
2 years ago
5
multiple threads
#31
GeorgeBGM
closed
2 years ago
2
Lets try again my changes that disapeared for some reasons ;)
#30
bgruening
closed
2 years ago
0
Is this working wih recursive submodules?
#29
bgruening
closed
2 years ago
0
Missing log.h file
#28
astrovsky01
closed
2 years ago
0
updated DOI to bioinformatics pub
#27
abueg
closed
2 years ago
0
Stable parallel version - merging
#26
gf777
closed
2 years ago
0
fetch upstream
#25
gf777
closed
2 years ago
0
commits from main
#24
gf777
closed
2 years ago
0
update to main
#23
gf777
closed
2 years ago
0
Broken parallel into parallel
#22
gf777
closed
2 years ago
0
update parallel to latest main
#21
gf777
closed
2 years ago
0
updating branch
#20
Nadolina
closed
2 years ago
0
Adding "smallest" component stats
#19
Nadolina
closed
2 years ago
0
incorrect scaffold stats for very large scaffolds
#18
mcshane
closed
2 years ago
1
added links for scaffolding example bTaeGut2 data
#17
abueg
closed
2 years ago
0
untested code for homopolymer compressing and compressing in sak file
#16
angebrajuka
closed
2 years ago
0
Create README_AGPscaffolding.md
#15
abueg
closed
2 years ago
1
Test
#14
angebrajuka
closed
2 years ago
0
Make file doesn't work
#13
passelma42
closed
2 years ago
5
Fix help section
#12
gallardoalba
closed
2 years ago
0
Finalized graph metrics and connectivity
#11
alicegiani
closed
2 years ago
0
Automation
#10
gf777
closed
2 years ago
0
Added graph metrics and connectivity for GFA1
#9
alicegiani
closed
2 years ago
0
Homopolymer compression
#8
angebrajuka
closed
2 years ago
0
Update gfastats-output.h
#7
alicegiani
closed
2 years ago
0
gzip files with extra field byte 6 cannot decompress with zlib
#6
gf777
closed
2 years ago
1
dfs edges
#5
alicegiani
closed
2 years ago
0
Added # edges and average degree
#4
alicegiani
closed
2 years ago
0
improve Makefile
#3
bgruening
closed
2 years ago
0
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