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vgteam
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GetBlunted
For bluntifying overlapped GFAs
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--input_gfa required
#56
gorkemsolun
closed
1 month ago
6
Parsing error
#55
tensulin
closed
6 months ago
2
1 genome long series of overlapping overlaps --> nonsensical translation table.
#54
Sebastien-Raguideau
opened
7 months ago
4
No longer crash on graphs with reversing self edges
#53
jeizenga
closed
11 months ago
0
Segmentation fault on compacted DBG
#52
Wenhai-Zhang
opened
11 months ago
8
Do MSAs of long sequences with kalign
#51
jeizenga
closed
1 year ago
0
GetBlunted nearly atomizes Lancet GFAs
#50
adamnovak
opened
1 year ago
3
"Aligning overlaps" fails with segmentation fault on Verkko graph
#49
rebeccaserramari
closed
1 year ago
3
Issues with compiling due to updated abPOA
#48
hmusta
closed
2 years ago
1
Error blunting GFA
#47
JoshuaDanielRubin
closed
2 years ago
5
Multithread
#46
rlorigro
closed
2 years ago
0
Issue 37++
#45
rlorigro
closed
2 years ago
0
Peg to the current abPOA commit
#44
jeizenga
closed
2 years ago
0
Resolve a couple of small bugs in biclique cover algorithm
#43
jeizenga
closed
2 years ago
0
ERROR: edge not found in overlaps
#42
Sebastien-Raguideau
closed
2 years ago
8
Issue37
#41
rlorigro
closed
2 years ago
0
Long overhang in POA causes bad global alignment
#40
rlorigro
opened
2 years ago
4
Fix overlapping overlaps occuring on one side only
#39
rlorigro
closed
2 years ago
0
Integrate abPOA to speed up alignment of long overlaps
#38
jeizenga
closed
2 years ago
0
ERROR: overlap length is > parent node/path length
#37
Sebastien-Raguideau
closed
2 years ago
15
Hifiasm and speed up
#36
Sebastien-Raguideau
closed
2 years ago
7
Terminate called when aligning overlaps
#35
hugocarmaga
closed
2 years ago
9
cmake error?
#34
zmz1988
closed
2 years ago
9
cannot build. get spurious error referring to the version of zlib
#33
dgordon562
closed
3 years ago
27
Make sure that M operations are real before skipping alignment
#32
rlorigro
closed
3 years ago
0
Added condition for old CMake verions
#31
rlorigro
opened
3 years ago
0
Add method to skip alignment for exact overlaps
#30
rlorigro
closed
3 years ago
1
Debug the dual graph reduction algorithm for computing biclique covers
#29
jeizenga
closed
3 years ago
0
Possible bug in biclique cover
#28
rlorigro
closed
3 years ago
0
Full-node overlap support
#27
rlorigro
closed
3 years ago
0
Fix deleted line
#26
rlorigro
closed
3 years ago
0
Portability improvements/fixes
#25
rlorigro
closed
3 years ago
0
More darkmode compatibility?
#24
rlorigro
closed
3 years ago
0
More README updates
#23
rlorigro
closed
3 years ago
0
CLI and documentation update
#22
jeizenga
closed
3 years ago
0
Update README
#21
rlorigro
closed
3 years ago
0
Get blunted
#20
jeizenga
closed
3 years ago
1
Major refactor and first complete version of Bluntifier
#19
rlorigro
closed
3 years ago
0
Debug validation script
#18
jeizenga
closed
3 years ago
0
Refactor and addition of terminus duplicator
#17
rlorigro
closed
3 years ago
0
Fix a bug in bipartite graph simplification routine of biclique cover
#16
jeizenga
closed
3 years ago
0
GFA simulator for unit tests
#15
jeizenga
closed
3 years ago
0
Integration tests
#14
jeizenga
closed
3 years ago
0
Handle each overlap in only one biclique
#13
jeizenga
closed
3 years ago
0
Dev
#12
rlorigro
closed
3 years ago
0
Overlap graph alignment
#11
rlorigro
closed
3 years ago
1
Improved vertex cover
#10
jeizenga
closed
4 years ago
0
Fix Linux compilation error
#9
jeizenga
closed
4 years ago
0
Add exact vertex coloring, which allows exact biclique cover on sufficiently small graphs
#8
jeizenga
closed
4 years ago
0
Biclique cover solutions for non-domino-free graphs
#7
jeizenga
closed
4 years ago
0
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